Changeset 1851

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11/21/07 12:08:22 (2 years ago)
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bertrand.thirion
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update of the text

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  • fff/trunk/tmp/texte_fondateur/CV_merlin.tex

    r1847 r1851  
    6262\titre{Current situation} 
    6363%############# 
    64 \flushleft 
     64%\flushleft 
     65\noindent 
    6566PhD Student on second year at Ecole Doctorale de Math\'ematiques, University of Paris XI 
    6667 

  • fff/trunk/tmp/texte_fondateur/cv_alan.tex

    r1850 r1851  
    44\end{center} 
    55 
    6 \flushleft 
     6%\flushleft 
     7\noindent 
    78Born on November 3rd, 1980 
    89\hspace{6cm} Nationality: Polish and British 

  • fff/trunk/tmp/texte_fondateur/cv_cecilia.tex

    r1846 r1851  
    11\begin{comment} 
    2 \documentclass[a4paper, 11pt]{report} 
    3 \usepackage[latin1]{inputenc}   %accents 
    4 \usepackage[T1]{fontenc}        %c\'esure des mots accentu\'es 
    5 \usepackage[dvips,final]{graphics} 
    6 \usepackage[pdftex]{graphicx} 
    7 \usepackage{graphicx} 
    8 \usepackage{array} 
    9 \usepackage{moreverb} 
    10 \usepackage{amssymb} 
    11 \usepackage{amsbsy} 
    12 \usepackage{lscape} 
    13 \usepackage[french]{babel} 
    14 \usepackage{epsfig} 
    15 \addtolength{\hoffset}{-2.0cm} 
    16 \addtolength{\voffset}{-4cm} 
    17 \addtolength{\textwidth}{1cm} 
    18 \addtolength{\textheight}{6.0cm} 
     2\documentclass[french,12pt]{article} 
     3\usepackage[english]{babel}  
     4   
     5\usepackage{comment}     
     6\usepackage{epsfig}  
     7\usepackage{amsmath,amssymb,amsfonts,amscd,latexsym}  
     8\usepackage{graphicx}  
     9\usepackage{tabularx}  
     10\usepackage{multirow}  
     11\usepackage{color}  
     12\usepackage{url}  
     13\usepackage{alltt}  
     14%\usepackage[notablist,nofiglist]{endfloat}%{final}%  
     15  
     16\setlength{\textheight}{8.875in}  
     17\setlength{\textwidth}{6.875in}  
     18\setlength{\columnsep}{0.3125in}  
     19\setlength{\topmargin}{0in}  
     20\setlength{\headheight}{0in}  
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     23\setlength{\oddsidemargin}{-.1875in}  % Centers text.  
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     26   
     27\tolerance = 500  
    1928 
    2029\begin{document} 
    2130\end{comment} 
    2231 
    23 \pagestyle{empty} % Uncomment if don't want page numbers 
     32\begin{center} 
     33\textrm{\textbf{C\'ecilia Damon}} 
     34\end{center} 
    2435 
    2536 
    2637%entete 
    2738\[ 
     39\vspace{0.25cm} 
    2840\hspace{-0.5cm} 
    2941\begin{array}{ll} 
    3042        \begin{array}{l} 
    31                 \textrm{\textbf{C\'ecilia Damon}}\\ 
    32                 \textrm{35 avanue Jean Moulin}\\ 
    33                 \textrm{75014 Paris}\\ 
    34                 \textrm{N\'ee le 22/11/1981 \`a Creteil}\\ 
     43                \textrm{Born on November 22th, 1981}\\ 
     44                \textrm{Nationality : French}\\ 
    3545        \end{array} 
    3646         
    3747        \qquad \qquad 
    3848        \qquad \qquad 
    39         \qquad \qquad 
     49 
    4050         
    4151        \begin{array}{l} 
    42                 \textrm{}\\ 
    43                 \textrm{Tel. Dom : 09.54.60.15.75}\\ 
    44                 \textrm{Tel. Port : 06.24.76.08.89}\\ 
     52                \textrm{Phone : +33 01.69.08.79.13}\\ 
    4553                \textrm{E-mail : ceciliadamon@gmail.com}\\ 
    4654 
    …… 
    4957\] 
    5058 
    51 %\vspace{0.5cm} 
     59\vspace{0.25cm} 
    5260\hspace{-0.5cm} 
    53 \underline{\textrm{\textbf{\textsc{\Large{Formation}}}}}\\ 
    54  
    55 %\\ 
     61\underline{\textrm{\textbf{\textsc{\Large{Formation}}}}} 
     62\vspace{0.15cm} 
     63\\ 
    5664\noindent 
    57 \textbf{\textsc{Nov. 2006/Nov. 2009 :}} 
    58                 PhD thesis, INRIA Futurs (Saclay), performed at LNAO (Laboratoire de neuroimagerie assistée par ordinateur), Neurospin/CEA (SAclay). 
     65\textbf{\textsc{Nov. 2006/Nov. 2009 :}} PhD thesis, INRIA Futurs (Gif-Sur-Yvette), performed at LNAO (Laboratoire de neuroimagerie assistée par ordinateur), Neurospin/CEA (SAclay). 
    5966                \textit{Thesis subject : Use of  Classification  techniques for the  
    6067                Characterization of a Population of subjects based on Functional Neuroimaging data.} 
    61 \\ 
     68 
    6269\noindent 
    63 \textbf{\textsc{2004/2005 :}} 
    64                 Master Mathematics-Vision-Perception at E.N.S. Cachan, Advanced mathematical 
     70\textbf{\textsc{2004/2005 :}} Master Mathematics-Vision-Perception at E.N.S. Cachan, Advanced mathematical 
    6571                techniques in signal and image processing  
    66 \\ 
     72 
    6773\noindent        
    6874\textbf{\textsc{2001/2004 :}} Master degree at IUP G\'enie Math\'ematiques et Informatique (University Paris IX Dauphine). Licence 3 and Master 1 in learning contract. Title of master engineer. 
    6975 
     76 
    7077\vspace{0.5cm} 
    7178\hspace{-0.5cm} 
    72 \underline{\textrm{\textbf{\textsc{\Large{Skills}}}}}\\ 
     79\underline{\textrm{\textbf{\textsc{\Large{Skills}}}}} 
     80\vspace{0.15cm} 
    7381\\ 
    7482\noindent 
    75 \textbf{\textsc{Mathematical skills:}} 
    76                 Statistical learning; excavation techniques of data (kernel methods, reinforcement learning,  
    77   neural coding, ...); IA; Image processing. 
    78 \\ 
     83\textbf{\textsc{Mathematical skills :}} Statistical learning; excavation techniques of data (kernel methods, reinforcement learning,  
     84  neural coding, ...); IA; Image processing.     
     85 
    7986\noindent 
    80 \textbf{\textsc{Computer programming skills :}}  Java, C++, C, Python,  Matlab, Shell Unix, SAS, Prolog, Lisp, Clips, QNAP, Lex, Yacc, Turbo Pascal, assembleur. 
    81 \\ 
    82 %\noindent 
    83 \textbf{\textsc{Foreign language skills:}} 
    84 \begin{itemize} 
    85 \item[\textsc{English :}] Fluent reading and talking. 800 points at the TOEIC test in 2004. 
    86 \item[\textsc{Deutsch :}] Zertificat Deutsch level. 
    87 \end{itemize}    
     87\textbf{\textsc{Computer programming skills :}} Java, C++, C, Python,   Matlab, Shell Unix, SAS, Prolog, Lisp, Clips, QNAP, Lex, Yacc, Turbo Pascal, assembleur. 
     88 
     89\noindent 
     90\textbf{\textsc{Foreign language skills :\\}} 
     91\textsc{English :} Fluent reading and talking. 800 points at the TOEIC test in 2004.\\ 
     92\textsc{Deutsch :} Zertificat Deutsch level. 
    8893 
    8994 
    …… 
    9196\vspace{0.5cm} 
    9297\hspace{-0.5cm} 
    93 \underline{\textrm{\textbf{\textsc{\Large{Professional experience}}}}}\\ 
     98\underline{\textrm{\textbf{\textsc{\Large{Professional experience}}}}} 
     99\vspace{0.15cm} 
     100\\ 
     101\noindent 
     102\textbf{\textsc{Meeting:\\}} 
     103\textsc{Juin 2007 :} Human Brain Mapping (Chicago, USA). 
     104 
     105 
     106\noindent 
     107\textbf{\textsc{Teaching:\\}} 
     108\textsc{2007-2008 :} Senior TD in Mathematics. Second year University (Licence 2) of IUT GMP at IUT de Cachan (94).\\ 
     109\textsc{2005-2006 :} Tutoring students at middle  schools Lakanal.\\                            at Sceaux (92).\\ 
     110\textsc{1998-2007 :} Math tutoring students at middle and high schools. 
     111 
     112\noindent 
     113\textbf{\textsc{University Internship:\\}} 
     114\textsc{Avril-Aout 2005 :} Master 2 MVA Internship of four months at laboratoire LAMI, Genopole (Evry).\textit{Mission : Statistical learning applied to biological regulatory networks.}\\ 
     115\textsc{Sept. 2003/2004 :} Learning contract of one year at SE2I computer department, Foncia company.  \textit{Mission : Java web developer on the real estate transaction  « TotalImmo » software.}\\ 
     116\textsc{Sept. 2002/2003 :} Learning contract of one year at SDVP (service de distribution et de vente du journal Le Parisien ) computer department. \textit{Mission : Setting up the network, ensuring the availability of databases with backup systems, administering Oracle databases on Unix and facilitate their management by developing programs in Java.} 
    94117 
    95118\begin{comment} 
    96 \noindent 
    97 \textbf{\textsc{Meeting:}} 
    98                 \begin{itemize} 
    99                         \item[\textsc{Juin 2007 :}] Human Brain Mapping (Chicago, USA)\\ 
    100                 \end{itemize} 
    101 \end{comment} 
    102119 
    103 \noindent 
    104 \textbf{\textsc{Teaching:}} 
    105                 \begin{itemize}  
    106                         \item[\textsc{2007-2008 :}] Senior TD in Mathematics. Second year University (Licence 2) of IUT GMP at IUT de Cachan (94). 
    107                         \item[\textsc{2005-2006 :}] Tutoring students at middle  schools Lakanal                                at Sceaux (92). 
    108                         \item[\textsc{1998-2007 :}] Math tutoring students at middle and high schools. 
    109                 \end{itemize}    
    110  
    111 \noindent 
    112 \textbf{\textsc{University Internship:}} 
    113                 \begin{itemize} 
    114                         \item[\textsc{Avril-Aout 2005 :}] Master 2 MVA Internship of four months at                                     laboratoire LAMI, Genopole (Evry).\textit{Mission : Statistical learning applied to biological regulatory networks.} 
    115                         \item[\textsc{Sept. 2003/2004 :}] Learning contract of one year at SE2I computer department , Foncia company.  \textit{Mission : Java web developer on the real estate transaction  « TotalImmo » software.} 
    116                         \item[\textsc{Sept. 2002/2003 :}]Learning contract of one year at SDVP (service de distribution et de vente du journal Le Parisien ) computer department.  
    117                                         \textit{Mission : Setting up the network, ensuring the availability of databases with backup systems, administering Oracle databases on Unix and facilitate their management by developing programs in Java.} 
    118  
    119                 \end{itemize} 
    120  
    121 \begin{comment} 
    122120\end{document} 
    123121\end{comment} 

  • fff/trunk/tmp/texte_fondateur/texte_fondateur.bbl

    r1846 r1851  
    694694\newblock {\em Neuroimage}, 29(1):74--89, Jan 2006. 
    695695 
    696 \bibitem{Thirion05e} 
    697 B.~Thirion, S.~Dodel, and J.-B. Poline. 
    698 \newblock Detection of signal synchronizations in resting-state fmri datasets. 
    699 \newblock {\em {{N}euroimage}}, 2005. 
    700  
    701696\bibitem{Thirion06} 
    702697B.~Thirion, S.~Dodel, and J.-B. Poline. 

  • fff/trunk/tmp/texte_fondateur/texte_fondateur.blg

    r1846 r1851  
    1313Database file #6: baseKZ.bib 
    1414Database file #7: unafpubli.bib 
    15 Repeated entry---line 2467 of file unafpubli.bib 
     15Repeated entry---line 2468 of file unafpubli.bib 
    1616 : @article{Baillet01 
    1717 :                   , 
    1818I'm skipping whatever remains of this entry 
    19 Repeated entry---line 3634 of file unafpubli.bib 
     19Repeated entry---line 3591 of file unafpubli.bib 
    2020 : @article{Dodel05 
    2121 :                 , 
    2222I'm skipping whatever remains of this entry 
    23 Repeated entry---line 5679 of file unafpubli.bib 
     23Repeated entry---line 5636 of file unafpubli.bib 
    2424 : @article{Thirion03c 
    2525 :                    , 
    2626I'm skipping whatever remains of this entry 
    27 You've used 137 entries, 
     27You've used 136 entries, 
    2828            2118 wiz_defined-function locations, 
    29             2308 strings with 51987 characters, 
    30 and the built_in function-call counts, 58714 in all, are: 
    31 = -- 5588 
    32 > -- 3798 
     29            2305 strings with 51900 characters, 
     30and the built_in function-call counts, 58443 in all, are: 
     31= -- 5563 
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    37 := -- 9952 
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    4141chr.to.int$ -- 0 
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    6868(There were 4 error messages) 

  • fff/trunk/tmp/texte_fondateur/texte_fondateur.tex

    r1847 r1851  
    1414%\usepackage[notablist,nofiglist]{endfloat}%{final}% 
    1515 
     16 
     17\usepackage[cyr]{aeguill} 
     18\usepackage{float} 
     19\usepackage{fancybox} 
     20\usepackage{moreverb} 
     21%\usepackage{a4wide} 
     22\usepackage{pifont} 
     23 
    1624\setlength{\textheight}{8.875in} 
    1725\setlength{\textwidth}{6.875in} 
    …… 
    4048 
    4149\title{ PARIETAL: \\ 
    42 An INRIA Futurs/Saclay project team dedicated to 
    43 high resolution neuroimaging, within the 
    44 Neurospin research centre.} 
     50An INRIA Futurs/Saclay project team dedicated to high resolution 
     51neuroimaging, within the Neurospin research centre.  } 
    4552 
    4653\author{ 
    …… 
    7784\begin{abstract} 
    7885This document presents the scientific context and motivation for 
    79 creating an INRIA team at the Neurospin Research Center. 
     86creating an INRIA team at the Neurospin Research Center. After a brief 
     87description of the team identifier and an inspection of its current 
     88members, we give an overview on neuroimaging and MRI techniques and of 
     89the research activities at Neurospin. The core part of the document 
     90describes the research projects of Parietal, in terms of research 
     91axes, but also smaller scale projects. The position of parietal within 
     92INRIA, and within the international community is finally discussed.  
    8093\end{abstract} 
    8194 
    82 \section{What ?} 
    83 PARIETAL 
     95\newpage 
     96 
     97\tableofcontents 
     98 
     99\newpage 
     100 
     101\section{PARIETAL} 
    84102 
    85103The parietal region is a lobe of the brain that integrates sensory 
    …… 
    100118\begin{figure} 
    101119\begin{center} 
    102 \includegraphics[width = 0.55\linewidth]{Lobes_of_the_brain_NL} 
     120\includegraphics[width = 0.45\linewidth]{Lobes_of_the_brain_NL} 
     121\\ 
    103122\includegraphics[width = 0.45\linewidth]{logo_at} 
    104123\includegraphics[width = 0.45\linewidth]{logo_vm} 
    …… 
    124143\item Lise Favre, Associate Engineer 
    125144\end{itemize} 
     145There resumes are given in the next pages. 
     146 
    126147 
    127148% add the resumes 
    …… 
    134155\newpage 
    135156\input{CV_merlin} 
     157\newpage 
     158\input{cv_vincent} 
     159\newpage 
     160\input{cv_lise} 
    136161 
    137162\newpage 
    …… 
    199224breakthroughs that allow the observation of new phenomena. 
    200225\\ 
    201 In the second half of the twentieth century, brain was mainly explored 
     226In the second half of the twentieth century, the brain was mainly explored 
    202227through electro-physiology studies in monkeys: Electrical recordings 
    203228provided local information on brain function (e.g. firing neurons) 
    …… 
    251276% cite{}benali ? 
    252277\item  
    253 MEEG, unlike the other modalities, provides measures the intrinsic 
    254 electro-magnetical activity of the brain. But it is recorded on the 
    255 scalp, with a rather coarse resolution. The Localization of the 
     278MEEG, unlike the other modalities, performs some measurement of the 
     279intrinsic electro-magnetical activity of the brain. But it is recorded 
     280on the scalp, with a rather coarse resolution. The Localization of the 
    256281activity is then quite difficult. 
    257282\end{itemize} 
    …… 
    420445be reminded, however, that there is no generally accepted model for 
    421446the BOLD signal, although it has been verified that the BOLD signal 
    422 locally correlated with synaptic activity \cite{Logothetis01}. Many 
    423 elctrical and chemical mechanisms need to be undertsood and modelled 
    424 to fully understand thi signal \cite{Aubert02}. 
     447locally correlates with synaptic activity \cite{Logothetis01}. Many 
     448electrical and chemical mechanisms need to be understood and modelled 
     449to fully understand this signal \cite{Aubert02}. 
    425450 
    426451Finally, Diffusion-Weighted MRI (DW-MRI) is a third modality, with 
    …… 
    448473The recent development of diffusion tensor imaging (DTI) enables 
    449474diffusion to be measured in multiple directions and the fractional 
    450 anisotropy in each direction to be calculated for each voxel. This 
     475anisotropy to be calculated for each voxel. This 
    451476enables researchers to make brain maps of fiber directions to examine 
    452477the connectivity of different regions in the brain (using 
    …… 
    469494\subsubsection{High-field MRI and Neurospin} 
    470495 
    471 Neurospin in a CEA research center dedicated to high-field MRI for 
     496Neurospin is a CEA research center dedicated to high-field MRI for 
    472497human and animal brain imaging. It has been installed in a dedicated 
    473498building in CEA/Saclay on 01/01/2007. 
    …… 
    602627deal with multiple comparison problems \cite{Hayasaka04}.  
    603628% 
    604 Finally, more work needed in inter-subject modelling and 
     629Finally, more work is needed in inter-subject modelling and 
    605630reproducibility assessment \cite{Thirion07}. 
    606631\\ 
    …… 
    632657template that approximates Talairach coordinate 
    633658system)\cite{Zeffiro1997,Ashburner1999,Hellier03,Ashburner07}. More Recently,  
    634 surface-based approaches have been approach for inter-subject comparison 
     659surface-based approaches have been proposed for inter-subject comparison 
    635660\cite{Fischl99,Fischl99b,Clouchoux05,Lyttelton07}. 
    636661\\ 
    …… 
    654679% EEG-MEG 
    655680 
    656 Across modalities, on can observe that the question of localization is 
     681Across modalities, one can observe that the question of localization is 
    657682still a quite important issue. 
    658683% 
    …… 
    673698\\ 
    674699 
    675 Another import aspect is brain connectivity, which tries to understand 
     700Another important aspect is brain connectivity, which tries to understand 
    676701and model the brain 'beyond blobology' (i.e. purely spatial aspects 
    677702and/or detection issues). 
    …… 
    687712Within the realm of functional data, there exist a lot of techniques 
    688713for connectivity analysis, either model-free (e.g. marginal or partial 
    689 correlation \cite{Marrelec06}, coherence \cite{Thirion05e}) or 
     714correlation \cite{Marrelec06}, coherence \cite{Thirion06}) or 
    690715model-based, i.e. from structural equation modelling (SEM) 
    691716\cite{Bullmore00} or Dynamical Causal Modelling \cite{Friston03}. 
    …… 
    11611186Finally, it should be reminded that the analysis of functional 
    11621187connectivity is also a very important to understand variability 
    1163 \cite{Achard07}. Adpated statistical measures to compare connectivity measures 
     1188\cite{Achard07}. Adapted statistical measures to compare connectivity measures 
    11641189across subjects \cite{Dodel05} will thus be particularly important. 
    11651190\\ 
    …… 
    12121237An important advantage of this approach is that the performance of the 
    12131238data analysis system is assessed in the well-known (and controlled) 
    1214 stimulus domain, not the complex brain signal signals domain (see 
     1239stimulus domain, and not in the complex brain signals domain (see 
    12151240\cite{Thirion06d}). 
    12161241% 
    …… 
    12291254probabilistic assessment \cite{Kriegeskorte06,Kleinschmidt07}. 
    12301255\\ 
    1231 A final question is whether the ekind of inference technique can be 
     1256A final question is whether this kind of inference technique can be 
    12321257used in the inter-subject framework to make groupe inference, using 
    12331258e.g. the individual classification maps to infer group-level 
    …… 
    15261551\subsection{Within INRIA} 
    15271552\label{sec:inria} 
    1528 INRIA has at least three times directly involved in Neuroimaging: 
     1553INRIA has at least three teams directly involved in Neuroimaging: 
    15291554Odyss\'ee (Sophia Antipolis), Asclepios (Sophia-Antipolis) and 
    15301555Visages(Rennes). An important difference with respect to Parietal is 
    …… 
    16781703Select (INRIA Orsay). 
    16791704% 
    1680 The collaboration is quite strong yet, given that two student of the 
     1705The collaboration is quite strong yet, given that two students of the 
    16811706team are in co-direction with Select :M. Keller, co-directed by 
    16821707M.Lavielle, and V.Michel, co-directed by G. Celeux. These two 
    …… 
    16861711high-dimensional spaces. 
    16871712% 
    1688 A monthly meeting take place at Neurospin to discuss technical 
    1689 questions in these directions. 
     1713A monthly meeting takes place at Neurospin to discuss technical 
     1714questions in these domains. 
    16901715 
    16911716\section{Conclusion}