Goals

Wavelets:

(Matthew, Fernando, Philippe)

• Warp library with numpy (Tuesday)
• HRF? drift modeling? (Tuesday)

Referentials / Normalization / Visualization

(Yann, Alexis, Jonathan, Denis)

• API for transformation / referential (Monday)
• normalization from anatomy to a template (Thursday)
• display results (Thursday)
• fMRI on cortical surface (file structures!) (Thursday)
• ROI, labelled image (Tuesday)

Testing

• use unittest -- no goal, but important
• Fernando's hacks for testing? Scipy?
• new module for testing/data
• write over read/write methods to put in random numbers for exception checking....?
• every new module we write this week is testable

Traits

• use them!

GLM / Modelling

(Alexis, Jonathan, JB, Benjamin, Bertrand, Matthew, Guillaume, tous?)

• specify design matrix pythonically (Tuesday)
• load and evaluate models from SPM (Wednesday), Orsay, fmristat
• scipy IO files?

Compatibility

• output to .mat or .xml -- pickle? hdf5?
• for each "object" in fMRI picture, what do we export? map from traits to hdf5?
• for now, dump, load = pickle
• load xml job and dump out python script (Guillaume)

Group analysis (Alexis, Jonathan, Bertrand, tous?)

• permutation tests (Tuesday -- see below)
• parallelization, ipython kernel model
• random effects model

Parallelization

• Fernando, help us!
• non-parametric Ttest with ipython parallel (Thursday)

Multivariate

• Parcellation (Bertrand) (A venir)
• PCA (Jonathan)
• ICA