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Changeset 3614

Timestamp:

03/29/07 21:47:40 (2 years ago)

Author:

wfspotz@…

Message:

Updated examples in the documentation

Location:

trunk/numpy/doc/swig

Files:

: 3 modified

numpy_swig.html (modified) (11 diffs)
numpy_swig.pdf (modified) (22 diffs)
numpy_swig.txt (modified) (6 diffs)

Legend:

: Unmodified
: Added
: Removed

trunk/numpy/doc/swig/numpy_swig.html

r3597	r3614
6	6	<title>numpy.i: a SWIG Interface File for NumPy</title>
7	7	<meta name="author" content="Bill Spotz" />
8		<meta name="date" content="18 March, 2007" />
	8	<meta name="date" content="29 March, 2007" />
9	9	<style type="text/css">
10	10
…	…
303	303	</tr>
304	304	<tr><th class="docinfo-name">Date:</th>
305		<td>18 March, 2007</td></tr>
	305	<td>29 March, 2007</td></tr>
306	306	</tbody>
307	307	</table>
…	…
315	315	<li><a class="reference" href="#in-place-arrays" id="id5" name="id5">In-Place Arrays</a></li>
316	316	<li><a class="reference" href="#argout-arrays" id="id6" name="id6">Argout Arrays</a></li>
317		<li><a class="reference" href="#other-common-types-bool" id="id7" name="id7">Other Common Types: bool</a></li>
318		<li><a class="reference" href="#other-common-types-complex" id="id8" name="id8">Other Common Types: complex</a></li>
	317	<li><a class="reference" href="#output-arrays" id="id7" name="id7">Output Arrays</a></li>
	318	<li><a class="reference" href="#other-common-types-bool" id="id8" name="id8">Other Common Types: bool</a></li>
	319	<li><a class="reference" href="#other-common-types-complex" id="id9" name="id9">Other Common Types: complex</a></li>
319	320	</ul>
320	321	</li>
321		<li><a class="reference" href="#helper-functions" id="id~~9" name="id9~~">Helper Functions</a><ul>
322		<li><a class="reference" href="#macros" id="id1~~0" name="id10~~">Macros</a></li>
323		<li><a class="reference" href="#routines" id="id1~~1" name="id11~~">Routines</a></li>
	322	<li><a class="reference" href="#helper-functions" id="id10" name="id10">Helper Functions</a><ul>
	323	<li><a class="reference" href="#macros" id="id11" name="id11">Macros</a></li>
	324	<li><a class="reference" href="#routines" id="id12" name="id12">Routines</a></li>
324	325	</ul>
325	326	</li>
326		<li><a class="reference" href="#beyond-the-provided-typemaps" id="id12" name="id12">Beyond the Provided Typemaps</a></li>
327		<li><a class="reference" href="#acknowledgements" id="id13" name="id13">Acknowledgements</a></li>
	327	<li><a class="reference" href="#beyond-the-provided-typemaps" id="id13" name="id13">Beyond the Provided Typemaps</a><ul>
	328	<li><a class="reference" href="#a-common-example" id="id14" name="id14">A Common Example</a></li>
	329	<li><a class="reference" href="#other-situations" id="id15" name="id15">Other Situations</a></li>
	330	<li><a class="reference" href="#a-final-note" id="id16" name="id16">A Final Note</a></li>
	331	</ul>
	332	</li>
	333	<li><a class="reference" href="#acknowledgements" id="id17" name="id17">Acknowledgements</a></li>
328	334	</ul>
329	335	</div>
…	…
495	501	</blockquote>
496	502	<p>The first signature listed, <tt class="docutils literal"><span class="pre">(DATA_TYPE</span> <span class="pre">IN_ARRAY[ANY])</span></tt> is for
497		hard-coded one-dimensional arrays. Likewise, <tt class="docutils literal"><span class="pre">(DATA_TYPE</span>
498		<span class="pre">IN_ARRAY2[ANY][ANY])</span></tt> is for two-dimensional arrays.</p>
	503	one-dimensional arrays with hard-coded dimensions. Likewise,
	504	<tt class="docutils literal"><span class="pre">(DATA_TYPE</span> <span class="pre">IN_ARRAY2[ANY][ANY])</span></tt> is for two-dimensional arrays with
	505	hard-coded dimensions.</p>
499	506	</div>
500	507	<div class="section">
…	…
535	542	</div>
536	543	<div class="section">
537		<h2><a class="toc-backref" href="#id7" id="other-common-types-bool" name="other-common-types-bool">Other Common Types: bool</a></h2>
	544	<h2><a class="toc-backref" href="#id7" id="output-arrays" name="output-arrays">Output Arrays</a></h2>
	545	<p>The <tt class="docutils literal"><span class="pre">numpy.i</span></tt> interface file does not support typemaps for output
	546	arrays, for several reasons. First, C/C++ function return arguments
	547	do not have names, so signatures for <tt class="docutils literal"><span class="pre">%typemap(out)</span></tt> do not include
	548	names. This means that if <tt class="docutils literal"><span class="pre">numpy.i</span></tt> supported them, they would
	549	apply to all pointer return arguments for the supported numeric
	550	types. This seems too dangerous. Second, C/C++ return arguments are
	551	limited to a single value. This prevents obtaining dimension
	552	information in a general way. Third, arrays with hard-coded lengths
	553	are not permitted as return arguments. In other words:</p>
	554	<pre class="literal-block">
	555	double[3] newVector(double x, double y, double z);
	556	</pre>
	557	<p>is not legal C/C++ syntax. Therefore, we cannot provide typemaps of
	558	the form:</p>
	559	<pre class="literal-block">
	560	%typemap(out) (TYPE[ANY]);
	561	</pre>
	562	<p>If you run into a situation where a function or method is returning a
	563	pointer to an array, your best bet is to write your own version of the
	564	function to be wrapped, either with <tt class="docutils literal"><span class="pre">%extend</span></tt> for the case of class
	565	methods or <tt class="docutils literal"><span class="pre">%ignore</span></tt> and <tt class="docutils literal"><span class="pre">%rename</span></tt> for the case of functions.</p>
	566	</div>
	567	<div class="section">
	568	<h2><a class="toc-backref" href="#id8" id="other-common-types-bool" name="other-common-types-bool">Other Common Types: bool</a></h2>
538	569	<p>Note that C++ type <tt class="docutils literal"><span class="pre">bool</span></tt> is not supported in the list in the
539	570	<a class="reference" href="#available-typemaps">Available Typemaps</a> section. NumPy bools are a single byte, while
…	…
552	583	</div>
553	584	<div class="section">
554		<h2><a class="toc-backref" href="#id8" id="other-common-types-complex" name="other-common-types-complex">Other Common Types: complex</a></h2>
	585	<h2><a class="toc-backref" href="#id9" id="other-common-types-complex" name="other-common-types-complex">Other Common Types: complex</a></h2>
555	586	<p>Typemap conversions for complex floating-point types is also not
556	587	supported automatically. This is because <a class="reference" href="http://www.python.org">python</a> and <a class="reference" href="http://numpy.scipy.org">NumPy</a> are
…	…
586	617	</div>
587	618	<div class="section">
588		<h1><a class="toc-backref" href="#id9" id="helper-functions" name="helper-functions">Helper Functions</a></h1>
	619	<h1><a class="toc-backref" href="#id10" id="helper-functions" name="helper-functions">Helper Functions</a></h1>
589	620	<p>The <tt class="docutils literal"><span class="pre">numpy.i</span></tt> file containes several macros and routines that it
590	621	uses internally to build its typemaps. However, these functions may
591	622	be useful elsewhere in your interface file.</p>
592	623	<div class="section">
593		<h2><a class="toc-backref" href="#id10" id="macros" name="macros">Macros</a></h2>
	624	<h2><a class="toc-backref" href="#id11" id="macros" name="macros">Macros</a></h2>
594	625	<blockquote>
595	626	<dl class="docutils">
…	…
613	644	</div>
614	645	<div class="section">
615		<h2><a class="toc-backref" href="#id11" id="routines" name="routines">Routines</a></h2>
	646	<h2><a class="toc-backref" href="#id12" id="routines" name="routines">Routines</a></h2>
616	647	<blockquote>
617	648	<dl class="docutils">
…	…
665	696	</div>
666	697	<div class="section">
667		<h1><a class="toc-backref" href="#id12" id="beyond-the-provided-typemaps" name="beyond-the-provided-typemaps">Beyond the Provided Typemaps</a></h1>
	698	<h1><a class="toc-backref" href="#id13" id="beyond-the-provided-typemaps" name="beyond-the-provided-typemaps">Beyond the Provided Typemaps</a></h1>
668	699	<p>There are many C or C++ array/<a class="reference" href="http://numpy.scipy.org">NumPy</a> array situations not covered by
669		a simple <tt class="docutils literal"><span class="pre">%include</span> <span class="pre">"numpy.i"</span></tt> and subsequent <tt class="docutils literal"><span class="pre">%apply</span></tt> directives.
670		Nevertheless, <tt class="docutils literal"><span class="pre">numpy.i</span></tt> may still be helpful when you encounter
671		them.</p>
	700	a simple <tt class="docutils literal"><span class="pre">%include</span> <span class="pre">"numpy.i"</span></tt> and subsequent <tt class="docutils literal"><span class="pre">%apply</span></tt> directives.</p>
	701	<div class="section">
	702	<h2><a class="toc-backref" href="#id14" id="a-common-example" name="a-common-example">A Common Example</a></h2>
	703	<p>Consider a reasonable prototype for a dot product function:</p>
	704	<pre class="literal-block">
	705	double dot(int len, double* vec1, double* vec2);
	706	</pre>
	707	<p>The python interface that we want is:</p>
	708	<pre class="literal-block">
	709	def dot(vec1, vec2):
	710	</pre>
	711	<p>The problem here is that there is one dimension argument and two array
	712	arguments, and our typemaps are set up for dimensions that apply to a
	713	single array (in fact, <a class="reference" href="http://www.swig.org">SWIG</a> does not provide a mechanism for
	714	associating <tt class="docutils literal"><span class="pre">len</span></tt> with <tt class="docutils literal"><span class="pre">vec2</span></tt> that takes two python input
	715	arguments). The recommended solution is the following:</p>
	716	<pre class="literal-block">
	717	%apply (int DIM1, double* IN_ARRAY1) {(int len1, double* vec1),
	718	(int len2, double* vec2)}
	719	%rename (dot) my_dot;
	720	%inline %{
	721	double my_dot(int len1, double* vec1, int len2, double* vec2) {
	722	if (len1 != len2) {
	723	PyErr_Format(PyExc_ValueError,
	724	"Arrays of lengths (%d,%d) given",
	725	len1, len2);
	726	return 0.0;
	727	}
	728	return dot(len1, vec1, vec2);
	729	}
	730	%}
	731	</pre>
	732	<p>If the header file that contains the prototype for <tt class="docutils literal"><span class="pre">dot()</span></tt> also
	733	contains other prototypes that you want to wrap, so that you need to
	734	<tt class="docutils literal"><span class="pre">%include</span></tt> this header file, then you will also need a <tt class="docutils literal"><span class="pre">%ignore</span>
	735	<span class="pre">dot;</span></tt> directive, placed after the <tt class="docutils literal"><span class="pre">%rename</span></tt> and before the
	736	<tt class="docutils literal"><span class="pre">%include</span></tt> directives.</p>
	737	</div>
	738	<div class="section">
	739	<h2><a class="toc-backref" href="#id15" id="other-situations" name="other-situations">Other Situations</a></h2>
	740	<p>There are other wrapping situations in which <tt class="docutils literal"><span class="pre">numpy.i</span></tt> may be
	741	helpful when you encounter them.</p>
672	742	<blockquote>
673	743	<ul>
…	…
685	755	For example, if you had a three-dimensional array as a function
686	756	argument, you could cut-and-paste the appropriate two-dimensional
687		typemap into your interface file. The modification for the third
	757	typemap into your interface file. The modifications for the third
688	758	dimension would be trivial.</p>
689	759	</li>
…	…
704	774	</div>
705	775	<div class="section">
706		<h1><a class="toc-backref" href="#id13" id="acknowledgements" name="acknowledgements">Acknowledgements</a></h1>
707		<p>Many people have worked to glue <a class="reference" href="http://www.swig.org">SWIG</a> and <a class="reference" href="http://numpy.scipy.org">NumPy</a> (and its
708		predecessors Numeric and numarray) together. The effort to
709		standardize this work into <tt class="docutils literal"><span class="pre">numpy.i</span></tt> began at the 2005 SciPy
710		Conference with a conversation between Fernando Perez and myself.
711		Fernando collected helper functions and typemaps from Michael Hunter,
712		Anna Omelchenko and Michael Sanner. Their work has made this end
713		result possible.</p>
	776	<h2><a class="toc-backref" href="#id16" id="a-final-note" name="a-final-note">A Final Note</a></h2>
	777	<p>When you use the <tt class="docutils literal"><span class="pre">%apply</span></tt> directive, as is usually necessary to use
	778	<tt class="docutils literal"><span class="pre">numpy.i</span></tt>, it will remain in effect until you tell <a class="reference" href="http://www.swig.org">SWIG</a> that it
	779	shouldn't be. If the arguments to the functions or methods that you
	780	are wrapping have common names, such as <tt class="docutils literal"><span class="pre">length</span></tt> or <tt class="docutils literal"><span class="pre">vector</span></tt>,
	781	these typemaps may get applied in situations you do not expect or
	782	want. Therefore, it is always a good idea to add a <tt class="docutils literal"><span class="pre">%clear</span></tt>
	783	directive after you are done with a specific typemap:</p>
	784	<pre class="literal-block">
	785	%apply (double* IN_ARRAY1, int DIM1) {(double* vector, int length)}
	786	%include "my_header.h"
	787	%clear (double* vector, int length);
	788	</pre>
	789	<p>In general, you should target these typemap signatures specifically
	790	where you want them, and then clear them after you are done.</p>
	791	</div>
	792	</div>
	793	<div class="section">
	794	<h1><a class="toc-backref" href="#id17" id="acknowledgements" name="acknowledgements">Acknowledgements</a></h1>
	795	<p>Many people have worked to glue <a class="reference" href="http://www.swig.org">SWIG</a> and <a class="reference" href="http://numpy.scipy.org">NumPy</a> together (as well
	796	as <a class="reference" href="http://www.swig.org">SWIG</a> and the predecessors of <a class="reference" href="http://numpy.scipy.org">NumPy</a>, Numeric and numarray).
	797	The effort to standardize this work into <tt class="docutils literal"><span class="pre">numpy.i</span></tt> began at the 2005
	798	<a class="reference" href="http://scipy.org">SciPy</a> Conference with a conversation between
	799	Fernando Perez and myself. Fernando collected helper functions and
	800	typemaps from Michael Hunter, Anna Omelchenko and Michael Sanner.
	801	Their work has made this end result possible.</p>
714	802	</div>
715	803	</div>
716	804	<div class="footer">
717	805	<hr class="footer" />
718		Generated on: 2007-03-2~~5 03:02~~ UTC.
	806	Generated on: 2007-03-29 20:45 UTC.
719	807	Generated by <a class="reference" href="http://docutils.sourceforge.net/">Docutils</a> from <a class="reference" href="http://docutils.sourceforge.net/rst.html">reStructuredText</a> source.
720	808

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